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Writing51k · #1849

clinical-reports

Creates structures for clinical research reports and performs local checks. It should only be used with synthetic or anonymized data and requires qualified review.

What it does

This tool helps create draft structures for clinical research reports, such as safety reports, trial results, and data summaries. It organizes information systematically but does not make diagnoses or medical interpretations.

When to use it

  • ✓To organize research data with anonymized information.
  • ✓When preparing a draft safety report for review.
  • ✓To structure clinical trial data before human review.

Example of what to ask your AI

“Create a draft report of clinical trial results using de-identified data.”

Want more? Open the sections below.

How to use

The easiest way: copy the message below and paste it into Claude, ChatGPT, Cursor or any AI. It reads the skill and follows the instructions.

Skill link

https://github.com/K-Dense-AI/scientific-agent-skills/blob/main/skills/clinical-reports/SKILL.md

Ready-to-paste message

Use this skill to help me: https://github.com/K-Dense-AI/scientific-agent-skills/blob/main/skills/clinical-reports/SKILL.md Read the SKILL.md file at that link and follow its instructions for my task.
How it works

The tool uses a set of rules to organize clinical report information. It ensures that the data used is anonymized and that all information can be traced back to its original source.

Installation

Easiest way: copy the skill link and paste it into Claude, ChatGPT or Cursor asking it to follow the instructions.

In the terminal (Claude Code, Codex, Cursor), in your project folder:

npx skills add K-Dense-AI/scientific-agent-skills --skill clinical-reports

Or download just the file:

curl -L https://raw.githubusercontent.com/K-Dense-AI/scientific-agent-skills/main/skills/clinical-reports/SKILL.md -o SKILL.md
Technical content (original SKILL.md)

Original text by the author, straight from GitHub.

Clinical Reports

Purpose

Prepare draft reporting structures, aggregate tables, and review manifests from verified authorized facts. Route each artifact to the correct reporting guidance, preserve provenance, and stop when source support or qualified review is missing.

This skill does not establish legal, regulatory, ethical, journal, accreditation, or institutional compliance. Its scripts check structure and internal consistency only.

Non-Negotiable Boundary

Never:

  • diagnose, recommend treatment, choose or change dosing, triage, or provide return precautions;
  • interpret images, specimens, raw laboratory results, symptoms, or other clinical observations;
  • invent, infer, normalize, “complete,” or silently reconcile observations, results, dates, units, denominators, causality, expectedness, seriousness, outcomes, or conclusions;
  • create an individual case safety report from patient-level narrative or decide reportability;
  • sign, attest, approve, file, transmit, submit, amend a source record, or act as a licensed clinician, pathologist, radiologist, laboratorian, safety physician, statistician, privacy officer, attorney, or regulatory professional;
  • use real PHI in examples, assets, tests, prompts, logs, or external services;
  • send report inputs, manifests, source locators, or clinical content to an external model, image service, API, or another skill.

Public official guidance may be retrieved separately using only public URLs or generic topic queries; include no patient or unpublished study details.

All generated artifacts must remain visibly marked:

DRAFT — NOT FOR CLINICAL USE, SIGNATURE, FILING, OR SUBMISSION. Populate only from verified authorized source records. Qualified review and sign-off are required.

If the request crosses a boundary, stop the unsafe portion. Offer a blank structured template, a source-fact manifest, or a deterministic structural check. Direct clinical or regulatory decisions to the responsible qualified professional.

Input Gate

Proceed only when all conditions are true:

  1. Purpose is explicit: publication draft, diagnostic-report scaffold, trial-results manuscript, protocol reporting review, CSR draft, aggregate safety table, or aggregate research summary.
  2. Data class is allowed: synthetic, deidentified, or aggregate.
  3. Authority is documented: the requester is authorized to use the records for the stated purpose.
  4. Local-only handling is feasible: no upload, remote API, telemetry, or credential is needed.
  5. Minimum necessary is defined: exclude fields not needed for the artifact.
  6. Provenance exists: every populated field or claim maps to one or more verified source-fact IDs.
  7. Review owner is identified: qualified clinical, statistical, safety, privacy, legal, journal, and/or regulatory review as applicable.

These gates depend on documented human assessments. Scripts inspect declarations; they do not independently establish authorization, de-identification, reviewer qualifications, or jurisdictional applicability.

Do not accept raw free-text patient records when a structured source-fact manifest can be supplied. Do not copy direct identifiers into this skill’s templates or scripts.

Route Before Drafting

Artifact Primary route Important boundary
Case report for publication CARE 2013 checklist and 2017 explanation Publication consent, privacy, journal policy, and clinical accuracy require human verification
Radiology draft scaffold ACR 2025 communication practice parameter plus modality-specific ACR material A qualified radiologist authors findings/impression and handles nonroutine communication
Pathology draft scaffold Current specimen-specific CAP Cancer Protocol, if applicable A qualified pathologist selects the protocol/version and authors diagnosis
Laboratory draft scaffold 42 CFR 493.1291 and laboratory policy The performing laboratory controls results, reference intervals, corrections, and release
Randomized-trial results report CONSORT 2025 plus every applicable current extension CONSORT is reporting guidance, not a conduct or submission standard
Randomized-trial protocol report SPIRIT 2025 plus applicable extensions SPIRIT is for protocols, not results or CSRs
Clinical Study Report ICH E3 plus E3 Q&A; consider ICH E6(R3) and regional requirements E3 is adaptable guidance, not a rigid universal template

…

FAQ

Can I use real patient data?

No, the tool can only be used with synthetic, de-identified, or aggregate data. Real patient data is not allowed to protect privacy.

Does the tool make diagnoses or recommend treatments?

No, absolutely not. It only creates report structures and checks data consistency. Clinical decisions must be made by qualified professionals.

What does 'draft' and 'qualified review' mean?

The generated reports are drafts and should not be used for clinical decisions or submission. They must be reviewed and approved by a qualified professional before any official use.

Details

Original description by the author

Creates safety-bounded draft structures and runs local deterministic checks for clinical case, diagnostic, trial, safety, and aggregate research reports. Use only with synthetic, de-identified, or aggregate inputs and verified source-fact manifests; every output requires qualified review.

repo: K-Dense-AI/scientific-agent-skills

Popularity

GitHub stars
51k
Ranking position
#1849
License
MIT
Updated
10/15/2026

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